You'll be fine. The engineering of the original Vigilant was for an 8" flue, correct. We used one for years on a 6" flue with restrictions.
1. No open door "fireplace" fires.
2. Be sure when top loading (the only way for this stove that makes sense) that the air is wide open, and that you have a hot fire when reloading. Normal for most wood stoves anyhow.
3. Your 6" flue has got to be straight and strong. No possible backdrafts, downdrafts, or angled pipes with the exception of a rear exit, but top exit preferred. Long enough also to draw well. You can borrow a tool to measure draft from any HVAC or chimney guy.
Try it out first. Then you can always spend the $$$ to change to the 8' flue.
P.S. Stoves need to match the flue draft. NOT OK to upsize, since it will decrease the draft. It's why when retrofitting a wood stove to a fireplace chimney, a lining is usually needed to decrease the flue size as one reason.