When you say "change the clutch side of the case"... I assume you realise you cannot just replace one half of the case pairs.... they are machined as pairs relative to the three indexing dowel pins.
If that's not what you meant...
You either did not set the bearing to the specified depth, or, you need to adjust the crank position in the crankcase...
They bearings are deep groove radial type and need to be in the center of their races. Biasing them to one side or the other will create a "preload" condition that is detrimental to bearing life. I assume you used OEM (stihl) bearings?
Tighten up the screws to the correct torque. Then.. tap the end of the crank with brass or poly hammer until the crank is BOTH centered in the crankcase (measure the lobes inside) AND it spins very freely. You might need to do this a few times. I find that if you tap to the side requiring less lobe clearence, center it, and give it a tiny bit more... one or two taps from the other direction will release the bearings and get you to the centered crank.